Scaffold Ga0255147

Basic Information
Taxon OID	3300024289 Open in IMG/M
Scaffold ID	Ga0255147_1000683 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024289 Open in IMG/M

Scaffold ID

Ga0255147_1000683 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8895
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (58.82%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (33.33%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

8895

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (58.82%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.4271	Long. (^o)	-81.6053	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.4271

Long. (^o)

-81.6053

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001881	Metagenome / Metatranscriptome	622	Y
F003331	Metagenome / Metatranscriptome	493	Y
F038911	Metagenome / Metatranscriptome	165	Y
F040099	Metagenome / Metatranscriptome	162	Y
F043358	Metagenome / Metatranscriptome	156	Y
F047662	Metagenome / Metatranscriptome	149	Y
F048267	Metagenome / Metatranscriptome	148	Y
F063620	Metagenome / Metatranscriptome	129	N
F076003	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_100068311	F003331	N/A	MSISEKAKIYHNVWCCAYQRRHNAKLKKDWELYDREHQTVLMCLNMRDAKFYQFDSEKPRYLK
Ga0255147_100068318	F038911	N/A	MVEKIKFVSVTRVIDDRKGIHYLDAIDENGIHWSAEMDNKQEKWLVYSKLWTRDPQHPYD
Ga0255147_100068320	F076003	GAGG	MKLTAHELAVITDTLTHSLAVSNWSGYYTPKSRENVRDLIAVIMDSMSVEVITEKPNFTIDADAGI
Ga0255147_100068322	F043358	GGAGG	MKVYDYRIVEDLNLKTLKPYFFIQYYHLAEKKYVLHSDATFQTLEEAQESIRLLRKYKEPVYHYVE
Ga0255147_100068326	F047662	N/A	MDYETYINIQQYSSDGDFHFTLKVTDVINQDFYYEGSAPTLEDVMNCIKIFLKNHQN
Ga0255147_100068327	F063620	N/A	MTTTITPKVAYIPLEYHMSVEDFLECWKDMEMEDEPTQEDYDAFVLERGKSYFYDMRGLFEKYIRLEDA
Ga0255147_100068332	F048267	N/A	MTDEEWETSLKNLNENTKKWVDEEIDKIKYNIVKDIINGDLEAL
Ga0255147_100068334	F040099	GGA	MKPFLGEEMTYEVQTWDDADKTVYYETVKDAIDYESARDIIVEKYPNRKV
Ga0255147_10006839	F001881	N/A	MNERAKKLMDEIWAARNSGADTEEKLIAAVLRIAAENVQFYTAQNNLIVLDKNDMLELAKELEE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0255147_1000683

Overview

Ecosystem & Geography

Associated Families

Sequences