Scaffold Ga0255147_1000621

Overview

Basic Information

• Taxon OID: 3300024289
• Scaffold ID: Ga0255147_1000621
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9455
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (92.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012971	Metagenome	275	Y
F026857	Metagenome	196	Y
F041091	Metagenome	160	N
F097250	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_100062114	F026857	AGGA	MTKNEANRLLDEVRDGNRLHPVVRITEALWATGDCVRHLPVHSPAFSETSINEWMESTRMASGEGIGDSPNRHLEEYQQGLNRHHESKK
Ga0255147_100062118	F041091	AGG	MQQSAKSEESMPEYKTQQQVYDEIRNDILEQVAVEIEKMQGFGKDTLSSFGIFIRGMKR
Ga0255147_100062122	F012971	AGGAG	MDFEREKWMALQDLNPSDVADAICDSQAIVEAIQSNAWADVADMVRSRVELKAERLAQVACDLPLTKWIDSEEELELWRYYRAELAREAIELNKSKLPKINPYQRGQQ
Ga0255147_100062123	F097250	AGGAG	MSNIVHSALNLVTHHTNAVMIRFLSYFEIWTPTLSLKERTKLRQKAARRMKEQPKTQRVVMPSKLITDPTFGYVNSAQTNVSETWKKHSTGVKNAGLFNNPNADRKNDKESGAEMPPQKIRRVQ