NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255147_1000615

Scaffold Ga0255147_1000615


Overview

Basic Information
Taxon OID3300024289 Open in IMG/M
Scaffold IDGa0255147_1000615 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9530
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (73.91%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000684Metagenome / Metatranscriptome938Y
F000808Metagenome / Metatranscriptome882Y
F005092Metagenome / Metatranscriptome412Y
F005745Metagenome / Metatranscriptome391Y
F034902Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0255147_100061513F034902AGGAMISTALAIQEATKDAVHDEEVMNMAAAIYHARHEVSEDDFIRMMYVYSAHLSAMTATLVTHACLTESQLNDMLDTIKEMETMGKDIE
Ga0255147_100061514F000684AGGMTLGGYTYQIGDLFTTSKTGVTGRIEKFVPQTRNVTKVMLRLANGQQRFAMVKTY
Ga0255147_100061520F000808GGAGGMEYTYSLTTSYDGSLVNTLRVSDLLEAVNAWDKCVDFGEAKEYATYNLSDTTGKMYTKTFYRNGNVSVK
Ga0255147_100061523F005092AGGAMDKLEYALRTIANCDLCQGRGYHGFANGEDYDIEDCECNIYGIILDEDGSVIYDNGLLSEPELFATMEAR
Ga0255147_10006158F005745GGAGMQVIATNLNSRLQKMVDLGISGIDIMHGELKILLLEAEAHLAEAQQVEEDNDYSDAMESMERKYWEGQVDALGHLYSLTYDLSFAIADKEAKDNGHFDEVTE
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