Scaffold Ga0255147_1000473

Overview

Basic Information

• Taxon OID: 3300024289
• Scaffold ID: Ga0255147_1000473
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11469
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (60.87%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002564	Metagenome / Metatranscriptome	547	Y
F006785	Metagenome / Metatranscriptome	364	Y
F035291	Metagenome / Metatranscriptome	172	Y
F099336	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_100047310	F035291	AGG	MAQTTPKAHPLLERVDRLASCEGHWLLIRDGEPETDCGHQWHQTPEAHLETCLAERWRGVSLGFAPSYCGYSDYSRTGLVGLSNYRVMTDTASTPDPNGAVLEIGYGWNGRGVVLDLRYVTEDQLETIEGLESYPLISEDDHSQLECEGIEADWGRESIADRVRTLQQLGLCIFAARDDSAPWRDGFDRLRESILETLNEYPTALT
Ga0255147_100047318	F002564	GGAGG	MALTISRGTNLVEHHQSTPLTAVNQTFEVHADSSEFTFAAVVTGGANFTLSFEANYNGGNTWFELDSSKTINSNGQYAYFYTGKPANKVRMRIASISSGTPSVVPIVAVAYHG
Ga0255147_100047319	F099336	N/A	MIETVSGGCVHIEIDAEEGTTTATFVFATPNEPAILGAFVSKLAQGVEVLIPIEEEEEDD
Ga0255147_10004738	F006785	AGG	VTGGQWSTKGLQREAREAEREQIRLEKRQLRDLRWAIERSTVKASDWQDLLTLHQMHGKEGPLQLWRELVPYWRDCQRVNRGADIPAGLFPQATRLLTRQTEKAPATRVKAAKGSTRKTRSDAGKRQPSRKSS