Scaffold Ga0255147

Basic Information
Taxon OID	3300024289 Open in IMG/M
Scaffold ID	Ga0255147_1000439 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024289 Open in IMG/M

Scaffold ID

Ga0255147_1000439 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12006
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (40.74%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

12006

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (40.74%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.4271	Long. (^o)	-81.6053	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.4271

Long. (^o)

-81.6053

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002317	Metagenome / Metatranscriptome	571	Y
F003805	Metagenome / Metatranscriptome	467	Y
F017122	Metagenome / Metatranscriptome	242	Y
F022403	Metagenome / Metatranscriptome	214	Y
F027171	Metagenome / Metatranscriptome	195	N
F043896	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_100043910	F043896	GGAG	VSKTEVPQWAKQAWGRVIVDQSRVDLLEQLYAWDGRDDKFHTYHHTYTGLYEKYNGR
Ga0255147_100043911	F017122	GAGG	VNPLQWEEDREVQLGEGVSRTSSEKAKLFELRIWLPGQGPMRDLVRAESLKQAIEFAQNRYPKCRIEVPGSVAGKPKLARSSPGPKETARRRLNLVEKQREQN
Ga0255147_100043913	F022403	GAG	MPLRHGSKIYCQLLLDSNRYKLAEQLAAAEGKKVTGMLREMVYAALEKALPASEYKAALAADEAVWRESVKKRVEGRLRSKQEQGESDKDA
Ga0255147_100043924	F027171	AGGGGG	MITDIYDFTMDTDGLVTVTAVVDEMVLVHHQTQLDPAEYGPALCRGTFYLSDEDLIPATDAELARLFYNRIDDWEVLHPDD
Ga0255147_10004395	F002317	N/A	MEHHEEVLVTAKPPESPFNQIVPALLTAAVVGLAGLFIQVAKLDQSVGTVAADIQELKNDSKERLSDLETRVRQIEMRIGYGK
Ga0255147_10004399	F003805	N/A	MRPIEHSTESQFHKAATDQWLIERFNSGDYRGLLEAALILNTLHQLERTKADWAIHEAADNLADQFGLDRDSA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0255147_1000439

Overview

Ecosystem & Geography

Associated Families

Sequences