NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255147_1000351

Scaffold Ga0255147_1000351


Overview

Basic Information
Taxon OID3300024289 Open in IMG/M
Scaffold IDGa0255147_1000351 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14666
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F006841Metagenome / Metatranscriptome363Y
F078427Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0255147_10003515F006841AGGAGGLATTVYDVEDIKLQNGATVQLKPLSIKQLRKFMTAMNKAQEVTTENESLSVLIDACAIALETQLPDLVKDRDALEEALDVPTINRILEVCGGIKLEDPNLIAAAVLAGQN
Ga0255147_10003517F000258GGAGGMTVNYKLDSMLELRKYLWGRMITLGIFDADAYWSDNLGESIIPIFPVQQTPEMNQFLSGKKHIVYDKIGVSYDTLWLICTEQILFTVYSTDFSEINEIRNFMIDEFRRMDESAKDINKSAGFNSEKFKFHSIYVADMSPTAPSEELQGFYSADIILEAQYSRSTNSSGRYI
Ga0255147_10003518F078427GGAGLDYSIPLVQASSGLRSLMTASKGKVFKESLVAQISAYVYYNAQVVSKLSSNAAFKNKFREIIFNQIDKDFAEFVDAQARVKPKSLHHVYEWRQTGDPSARLFKLNKLNTEGLGFSVSYEFMPSKTFASTEGNRRHVFTKKASVMEAGMPLKIAPRHSKRLVFETNGYTVFMPEGASVTVKSPGGASVRNSFMMTYSRFFKSNLVNVSIRKSGFQQLFNKSMSKALKLPAEIRTVKYSFSPNTLSVQADAALASAFGGAL
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Institute for Fundamental Biomedical Research
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