Scaffold Ga0255147

Basic Information
Taxon OID	3300024289 Open in IMG/M
Scaffold ID	Ga0255147_1000308 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024289 Open in IMG/M

Scaffold ID

Ga0255147_1000308 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16062
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (85.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

16062

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (85.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.4271	Long. (^o)	-81.6053	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.4271

Long. (^o)

-81.6053

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002997	Metagenome / Metatranscriptome	514	Y
F008619	Metagenome	330	Y
F014737	Metagenome / Metatranscriptome	260	Y
F022651	Metagenome / Metatranscriptome	213	Y
F023109	Metagenome / Metatranscriptome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_100030812	F022651	N/A	MNTTIKDTNDLLSYLISQSGSRKDWFGFQQQKLTAISLAHEIAAKHADKMTPNEVVQYVSELNNQLFQKIIKPGA
Ga0255147_100030817	F008619	GGAGG	MSFQTIFEIQQFMTVNNRRVVGQQVARSGYITVAQYLTAVPWVFTVMPHNYLYYPQVRDIIQTIDNKDRQLPETIIFNSSNLSWFTKYQGDVVAPVFTLASTPTPNTQTLSMNVTSGAGYAFKAGDFCMVGGYTYKVTQDVLRGTGVASVPIHRPLIGTPASGATVYVGNDCSFNVVAERCPTYTLNPMTNGAFVQWDDAFVFREYIT
Ga0255147_100030818	F014737	GGAG	MTTINAVNSASIRHAEFVRMTVGTAATVYTFCNAAAPVTVSGITFSNLGALLSVGDVQRDMRATSDDMTIALTGIDPTNVGIILGSEIKGSLVEVWRGFLDSDNQIITTPTTQFFKRYQGIISSVSITEDFNIEARTRIATCSIACSSMRRILENRLGGLKTNQSNWQFFYPSDTSMDRVATISNTYFDFGKPPQVETQATDTTFEPTSIGGAG
Ga0255147_100030819	F023109	AGGCGG	MIRLATRYDIPRLLEIVEAYAYENPIKVLGRQHNHFPKYVEELLFSIIAGRGFIYIDEHMRGAIVAIKQGNIWAPKVKELNELLWWVEPEHRNGTVGGRLWKAFDDRAKAMLKAGDIDFVVTSISANGPLIDYTKRGYKALGASFVRE
Ga0255147_10003087	F002997	N/A	MGIARYESITVNNLAFTKSSFGEQDTTITEWFKTRALTHDVANSLRISEKYRVYQDLVNFTLNFTPNTREIVNNQNLYSITWRNHDWRITDVRESNDRMKVTLLCYRTDPVTAV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0255147_1000308

Overview

Ecosystem & Geography

Associated Families

Sequences