Scaffold Ga0255147

Basic Information
Taxon OID	3300024289 Open in IMG/M
Scaffold ID	Ga0255147_1000282 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024289 Open in IMG/M

Scaffold ID

Ga0255147_1000282 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17292
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (30.77%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

17292

Total Scaffold Genes

39 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (30.77%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.4271	Long. (^o)	-81.6053	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.4271

Long. (^o)

-81.6053

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028799	Metagenome	190	Y
F036214	Metagenome	170	Y
F038601	Metagenome / Metatranscriptome	165	Y
F056571	Metagenome	137	N
F082606	Metagenome	113	N
F097251	Metagenome / Metatranscriptome	104	N
F104787	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_100028212	F028799	N/A	MTRTSITDNMTAAELAAWKENNRKQAHCGTIIIETAKPVRKSQRQQWQEFRTETLGMIEAAKRERHFHILPQLIQRLNTANEMLNNRALS
Ga0255147_100028215	F056571	N/A	LARSTAAEVNFRVDTIYGLLTEGQSRGQIVQFGSKQWNITPRQVDEYIQRARIRLEEDAAMTRPSWIAEALGRARTYEQSAYKRGQTQVALNAIQLQAKLIGLEI
Ga0255147_100028217	F038601	AGCAGG	VERGDGLLGLRRLILSLVNHLRLTMKLYQPDAKGKYVWQVSDEKTRQVSYSVTTSRTPPPNACYGHPMGKYDDQGLYMTFCPNVGADDPKSPLAARYVVHPLAASERDNADKERLWSHI
Ga0255147_100028220	F104787	GGAG	MKKAFDLATVRILLRRMVDKNYITIEDLDVPSQGWVITMEDAKRIPGFTPPIHRNPLRDEPTPTERVEVVSPRDFPVAATPPDPVQRGSAPLLPRADGAVAESFGDAGVQGHEGPVGDAADHGDEAHLGAAWEGSTQGVGGFSDDW
Ga0255147_100028231	F097251	N/A	MIILTDSQLVELNNRIGQIQRLIESAQVIKAGAAQPKAVTDAAETPSIVSKPRKAKRKRGALNEQKVAEIKARLAAGGESAQKIANDYGVHVTTVNLIKYGKTWKNVQASA
Ga0255147_100028232	F036214	N/A	MDHEAWDWMTLKVDPTSQFNVEKEARRLENTPNAGPIAAQLYRAWNMQQTLLQQATNRIAALELQLMKDQADA
Ga0255147_100028234	F082606	N/A	MSYVVLSAQCAGMVAPVIPLGQKTYKMSPNSRGVRAERDLWRFHPGMPCYVRGWPQVEATVIAKVEGCSWPTYIVQSFSTGASYQVSQLYLSKRPIEQR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0255147_1000282

Overview

Ecosystem & Geography

Associated Families

Sequences