Scaffold Ga0255147_1000270

Overview

Basic Information

• Taxon OID: 3300024289
• Scaffold ID: Ga0255147_1000270
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17887
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (53.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002317	Metagenome / Metatranscriptome	571	Y
F002867	Metagenome / Metatranscriptome	524	Y
F017122	Metagenome / Metatranscriptome	242	Y
F022403	Metagenome / Metatranscriptome	214	Y
F043896	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_10002701	F022403	GAG	MPLRHGSKIYCQLLLDANRYKLAEQLAAAEGKKVTGMLREMVYAALEKALPASEYKAALAADEAVWRESVKKRVEGRMRSRQEQGESDKDA
Ga0255147_100027010	F002867	N/A	MIVHSTKFEGGFSLEQLENERGEIYYRACKDSICRYAEDEYIARMYLEGMGWDPTA
Ga0255147_100027011	F002317	N/A	MEHHEEVLITAKPPESPFNQVVPALLTAAVVGLAGLFMQVAKLDQSVGTVAADIQELKNDSKERLSDLETRVRQIEMRVGYNK
Ga0255147_10002703	F017122	GAGG	MNPLQWDLDQEVQLGEGVSRTSSEKAKLFELRIWLPGQGAMRDLVRAESLKQAIEFAQNRYPKCRVEVPGSVAGKPKLARSSPGPKEKARRRLNLVEKQREQN
Ga0255147_10002704	F043896	GGAG	VSKTEVPQWAKEAWGRVIVDQSRVDLLEHLYAWDGRDDKSHPYHHTYTGLYEKYNGR