Scaffold Ga0255147

Basic Information
Taxon OID	3300024289 Open in IMG/M
Scaffold ID	Ga0255147_1000251 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024289 Open in IMG/M

Scaffold ID

Ga0255147_1000251 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18762
Total Scaffold Genes	45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (6.67%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

18762

Total Scaffold Genes

45 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (6.67%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.4271	Long. (^o)	-81.6053	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.4271

Long. (^o)

-81.6053

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005630	Metagenome / Metatranscriptome	394	N
F011075	Metagenome / Metatranscriptome	295	Y
F018718	Metagenome / Metatranscriptome	233	Y
F027843	Metagenome	193	Y
F029655	Metagenome	187	Y
F036701	Metagenome / Metatranscriptome	169	Y
F045558	Metagenome / Metatranscriptome	152	Y
F105160	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_100025125	F027843	N/A	MQIEFLNANGTVWVVKRKFKADSWFVQGLFSNKFTAQEVCEAYCVEKLLRGPDDTHYLVNEVPEAEIVID
Ga0255147_100025128	F105160	N/A	MAMETNLTTEQLMDIELVLEEAGAWGLRYEVEVTAKQYIEDGHEPVDAYHFAYEDWIK
Ga0255147_10002513	F036701	N/A	MDGLTFGLIWVLLSFPIVRHVNRKMEETDDELRFRTSFQLVLFIRAQFEVPKWYLIQLTKLLSK
Ga0255147_100025131	F029655	N/A	MNQLVFKVNEKACVAFLKQYPLVCNLLESANGKTLLDGYKKFLKLKDVNESKLGGRAECIGSVSFGTKTFYKYNWDACSGWAELYQYWKTKK
Ga0255147_100025132	F018718	N/A	MKIREYYLEAFPTDDLGDGINPKATFAGLLNQLIVGGDVYEYLYVYDSIIRERLFEKLAEELEVSYEYVYNLWLK
Ga0255147_100025133	F011075	N/A	MFERNLGIVVGSHLNDAMIEISINPQLASKRMKFVKALTFFNEDLTKGVTDDYLNWLWNEIFENQRWGGPYVKGTNYSK
Ga0255147_100025143	F045558	N/A	MIPIVRISDGMEGYAFLVIDYSQEHNLLFTCAMDDGEIWTLSNKEIRFCKNISLDRKDVK
Ga0255147_10002516	F005630	N/A	MANLYEVDGFYGTRNRGTILVYETYSGKRWYCVEGSCNINCTYDEITDGTNVETLSDIDTMTSRNGIESVRELYDYVIS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0255147_1000251

Overview

Ecosystem & Geography

Associated Families

Sequences