NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255147_1000249

Scaffold Ga0255147_1000249


Overview

Basic Information
Taxon OID3300024289 Open in IMG/M
Scaffold IDGa0255147_1000249 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19001
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (67.35%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024292Metagenome / Metatranscriptome206Y
F055822Metagenome / Metatranscriptome138Y
F063745Metagenome / Metatranscriptome129Y
F095369Metagenome / Metatranscriptome105N
F099176Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0255147_100024926F055822GGAGGVAGYTKEFLVDAYLWRFTKIPSITIDRLLDLERIAINTYDKYGKDKFRDYASLDAEYIRNYKASLAR
Ga0255147_100024938F095369AGGVAYYIRDGELVPVAIPLNQRVKIGKYYEPPQLSYLSNDQLWIQDVYVFKQIPWYMIKNRYERYLLYATLYGAIVVMLTMIGRYWLGAPN
Ga0255147_100024941F063745GGAGVDQEIIDAINSALKPNQQPQTPTKLSPRFKALARECGFVFWNSEPHGPGPGHIDWSCDYTSEFEHYSRELVIWTCELMRQEIVRDYLFRSSENTYKHLVVQD
Ga0255147_100024947F099176AGGMSQELTNQQLKDLNDDVQEFIDKLRIHYNDDTLAIAAALTQWGLRLYKSELSTPEFYQLLVYTIETNRYL
Ga0255147_100024949F024292AGGMKYNKELTDKIVEQYKSGQTAKQIAEGLGVADRSIIAKLSSLGVYQKKTYVNKRGEVPIKKYEMIERLAELLEVPSDQLESLEKVNKNVLKLLENRLSDPKPQ
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