Scaffold Ga0255147

Basic Information
Taxon OID	3300024289 Open in IMG/M
Scaffold ID	Ga0255147_1000176 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024289 Open in IMG/M

Scaffold ID

Ga0255147_1000176 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25247
Total Scaffold Genes	86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	43 (50.00%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

25247

Total Scaffold Genes

86 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

43 (50.00%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.4271	Long. (^o)	-81.6053	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.4271

Long. (^o)

-81.6053

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008402	Metagenome / Metatranscriptome	334	Y
F008943	Metagenome / Metatranscriptome	325	Y
F013514	Metagenome / Metatranscriptome	270	Y
F019061	Metagenome / Metatranscriptome	232	Y
F027061	Metagenome / Metatranscriptome	196	N
F048267	Metagenome / Metatranscriptome	148	Y
F072285	Metagenome / Metatranscriptome	121	Y
F091921	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_100017659	F027061	GAG	MTTRALQILECTMELSMRPKSKDRQKLIARVINEVADRLCTDCGELEDPIEILREIADEVEAL
Ga0255147_100017669	F019061	N/A	MLTQVFEMTEPTDTEILEFLLNQFQAHNLKMNGESDWVFMNGGSRMNHLKGKTVRNAVIAAMRAK
Ga0255147_100017671	F048267	N/A	MTDEEWETSLKSMNEYAKKWVDEEIDKIKYNIIKDIINGELNEKL
Ga0255147_100017672	F008943	GGAG	MRNFDGIDWAVLSVFFIMIVAAGVITYDAQQQRTLFQQTYNKNLECRQALKDQTVGRVNEICGDVPAIGAFVK
Ga0255147_100017677	F091921	GGA	MIEMRVVLHENRINPEIQYRFMLFSMGQGGYLCPPNPDMKWSEWRTCPYVKYEEIEA
Ga0255147_100017680	F072285	GGA	MKYPQSVNKSIFIREVYEDTYKTPYDYIVDTMIWENRVDELHTIWCKGKEPRKVEK
Ga0255147_100017683	F013514	GAGG	MSINLEELQKYLDDNNITFEEYMRANMITDEERKYIDKVWMNAIYKNLGEDT
Ga0255147_100017684	F008402	AGGA	MAIEITNQVRIQEHTDYWYTVEDTHLDVGFEGCTISYWELPSGVNTSEKRVNHICMEKEEALAIADAIYKLFKN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0255147_1000176

Overview

Ecosystem & Geography

Associated Families

Sequences