Scaffold Ga0255147

Basic Information
Taxon OID	3300024289 Open in IMG/M
Scaffold ID	Ga0255147_1000129 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024289 Open in IMG/M

Scaffold ID

Ga0255147_1000129 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32327
Total Scaffold Genes	59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	54 (91.53%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

32327

Total Scaffold Genes

59 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

54 (91.53%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.4271	Long. (^o)	-81.6053	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.4271

Long. (^o)

-81.6053

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001143	Metagenome / Metatranscriptome	766	Y
F005320	Metagenome / Metatranscriptome	405	Y
F026266	Metagenome	198	Y
F042293	Metagenome / Metatranscriptome	158	N
F049625	Metagenome	146	Y
F054861	Metagenome	139	Y
F058807	Metagenome	134	Y
F088893	Metagenome / Metatranscriptome	109	N
F099290	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_100012923	F099290	AGGAG	MTLEFETKAGLVFGLEADQLYIMDEDDNMGDDPVPVVYLHIGFITLAFIMD
Ga0255147_100012926	F042293	GAG	VKNITFEELKEALKRLDEVTLLELLGLQSDDLVDRFDDVIENKQEYLIKELE
Ga0255147_100012929	F058807	AGGA	MNVNLIKEHENGDATYQFDLTASEAQALLTFGILEAIKAGLREGERLTVEGDDIENLSNT
Ga0255147_100012934	F005320	AGGA	MSIDSMKPVKVAGELFWAGWMKDYNKKFNDDNDKYECTLGQLSDAAAAKLEELGIKIKEKDTMGKYIVGKSKFLFEPVDEEGNPVDVSKIGNGTKCFALVSSYRHKMSAKFGAAPSIKKLVITELKIYSPEGSPEEETADDIL
Ga0255147_100012935	F088893	GGAG	VQTGVKHIEKNQILFNVEGETFKIKIGEDLDLEEVYTVLLSALCYLEDLAGGVVVPPNNELH
Ga0255147_100012941	F001143	AGGAG	MSAWLIAVVGIVYTVVAVDLLIKGNMGLGIAFVGYALGNVGLYLEASK
Ga0255147_100012950	F049625	AGG	MLSEIDLRDWDEQPSRPLYDVPEHTPVKTHIGLLWFNALEGDHAVCYNNEGLAIHMKAWATVNPLKRRFK
Ga0255147_100012951	F026266	AGGA	MSTITFHFVGQLEDSMAVVDVQCQIDSDGDCSGLDSVTFKGLDILEVISSNQWEDLEFQASKAYKAEQYEQATIDYDLERSLEAVYGLSKPSFYTR
Ga0255147_100012952	F054861	AGGAG	MNTKLLKYTRELFKTYDVPEQVRREYRRKWVRSIRLLGDKWLLAQSVQRRTLDV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0255147_1000129

Overview

Ecosystem & Geography

Associated Families

Sequences