Scaffold Ga0255147

Basic Information
Taxon OID	3300024289 Open in IMG/M
Scaffold ID	Ga0255147_1000090 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024289 Open in IMG/M

Scaffold ID

Ga0255147_1000090 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	38354
Total Scaffold Genes	59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	29 (49.15%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

38354

Total Scaffold Genes

59 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

29 (49.15%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.4271	Long. (^o)	-81.6053	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.4271

Long. (^o)

-81.6053

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002317	Metagenome / Metatranscriptome	571	Y
F003661	Metagenome / Metatranscriptome	474	Y
F007971	Metagenome / Metatranscriptome	341	Y
F036214	Metagenome	170	Y
F038601	Metagenome / Metatranscriptome	165	Y
F077255	Metagenome	117	N
F097251	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_100009034	F038601	GAG	MKLYAPENKGKYVWQTADAKTKQVSYSVTTTRTAPPDACYGHPMGKYDDQGLYMTFCPNVGADDPKSPLAARYVLHPMAASERDKADTQRLWREI
Ga0255147_100009045	F097251	N/A	MDSMIILTDSQVVELNNRIGQIQRLIESAQVIKAGGAAQPKAVTEHDQPTALTSKRRKAKRKRGALNPDKVAEIKRRLAAGNESAQKIANDYGVHVTTVNLIKYGKTWKDVQVSA
Ga0255147_100009046	F036214	N/A	MDNEAWRWMQLKPDATSAFQVEKEARRLENTPNAGPIAAQLYRAWSMQQTLLQQATNRIAALELQLMKTGNQADT
Ga0255147_100009052	F077255	GAGG	VIHLFNNRLILERHKLFENWRCRIRLGPRPEQQVEVDLHTKELRLAFVRANNIYQAFRAGEKLEPLEDPEPTGLRCWDCIQWAPTLTHNGGNGCSLGFPEAKSFPNGRFANQCSLYNDGTDNFEPD
Ga0255147_100009055	F003661	AGGA	MDPTTAAVIAIIIAAGSEIISLLPIKENGWIQLILKALKVLFPKR
Ga0255147_100009056	F002317	GGCGG	MEHHEEVHSAAPQQPSLINQAVPALLATAVVGLAGLFMQVAKLDQSVNTVAADIQELKNDSKERLSDLEGRVRYIEMSIGKSK
Ga0255147_100009057	F007971	GGA	MAVKSKTALGRVEHKAGRPKTTSQGFGQHSRPRRRGKKKLVGQGR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0255147_1000090

Overview

Ecosystem & Geography

Associated Families

Sequences