Scaffold Ga0255147_1000048

Overview

Basic Information

• Taxon OID: 3300024289
• Scaffold ID: Ga0255147_1000048
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 63206
• Total Scaffold Genes: 105
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (40.00%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005382	Metagenome / Metatranscriptome	402	Y
F007025	Metagenome / Metatranscriptome	359	Y
F021068	Metagenome / Metatranscriptome	220	Y
F022611	Metagenome / Metatranscriptome	213	Y
F025994	Metagenome / Metatranscriptome	199	Y
F032199	Metagenome / Metatranscriptome	180	Y
F034858	Metagenome	173	Y
F036146	Metagenome / Metatranscriptome	170	Y
F057999	Metagenome	135	Y
F059774	Metagenome / Metatranscriptome	133	N
F069846	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_100004817	F069846	GAGG	MPSGNLPVFSGTVDLTPDILNAAKKAGPNAQGNYSFRVALWNNDKRDKDTAPHFKGQVTVNKMENSPKAYSSFWQNGESASGSFASSSSNDDLF
Ga0255147_100004829	F032199	AGGAGG	MQNEFCESPKSCMAVAYRRETGEELSPAGLDAAYAELVDSFQHEMEEFVRKYCPKRLTDFDQLMEQAFWQYH
Ga0255147_100004834	F036146	GAGG	MTPCRTFKITTSEGKTIALGAMSPKQAEHFMLAMRPDIKIAMIEEIKPLPEPSADQWE
Ga0255147_100004839	F059774	GGAGG	MICEEYENDPELDWERPQRLNRQLSLQQLESRLELWKQKHEDICLKLYRAATGI
Ga0255147_100004847	F005382	GAG	MDKTALIKQFIFNAGSSIVSVEFIKADGSVRRLQFNPRDSKEIKGTGTPIKKPSIVRCRDFRIARTAGEGAWRSFDCERVISVKSNGQAIYF
Ga0255147_100004853	F057999	N/A	MTDRLIFTMAAFSPTQGQWWRSCAPKGTERRVKLVASCQGFWLWTADFRDARTSKLLTSKFFCTKPNSDEPVALFESADDRQRWMQKQTA
Ga0255147_100004856	F007025	AGGA	MAVQSPAGAVQMILVDFFSEDCCKGTELVEGWYFYADDDESFVGGPFTSEEAALKAAFDGHGW
Ga0255147_100004860	F022611	N/A	MHVEFVIRTSVVKLRTIVMFGLPERQPFNYGPYKLWPCFSRPEFQWFAAIDGAPHYFRSLNEAKLFIKDRLSMEDAENPCD
Ga0255147_100004861	F025994	N/A	MTEEEMKAFVHRSIREHELRVALWSGLLGAALLAGTWHAIRLCYLH
Ga0255147_100004877	F034858	AGGAG	MLPPSSVRFCISTCQRFAAYTLPVIIPSLTRAGIGTSEILIVNGGCEDWRIDHYGDVPMICTPQNSFEYTPLIEIVEHKLTSSFWFLLHDTCIAGPAFKSLVYEPPEGFEKVAMKHTPSMSIGLYGMDYLMRHKDRLTAIKNMDSSPPALQAWKQWGVPNEDYMLWKLQDSPAGLYHPDKHGPDEWNYQGHADMYGTGMSRRIEYFPQLDLFKAKSNWQGVQPTLCIDI
Ga0255147_100004880	F021068	AGG	MVDSTIYAVCIPGEKVRYTARSRIVPIMGGSHVLSKEERESLRAEGYAFDDENAVLSPLNDRWGELSCVHWMILNAKENNIGNAQYRRNWLEPEDQWYCPETLYVPEPAQFSCTLEQQFYGGHSAFDAPVITRKLADEGKWIFTREEIDKIWAQSSFIGCNMARGPRQAYLRFMTTLFAGLAPIWREHKEHFLSIEGYDKRAIAFIAERLITGMVLCRDRIFPGVKIATAPIGFIN