Scaffold Ga0255147_1000033

Overview

Basic Information

• Taxon OID: 3300024289
• Scaffold ID: Ga0255147_1000033
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 86153
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002434	Metagenome / Metatranscriptome	559	Y
F008185	Metagenome / Metatranscriptome	337	Y
F039012	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_100003318	F008185	AGGA	MPTTFKHAVNTGIGTSPVDVLQTPIGYRITVIGCNLANTTDYDVCVVDVYVVSEDSVEAVYIKGLPIPPNSSVKLITNGEKLILPETAGLRIVSDTETSVDAVVSYVEIS
Ga0255147_100003326	F039012	AGG	LFDLNIGMRIEGEKDFSLLRKHIQAWRSRFPMFTHDVNRIEQIIENHIQNFAIAGVHYRQTHQRQYLERAQAEIDEINRVIELVEKLELMALLGR
Ga0255147_100003340	F002434	AGG	MTTESHDRMIAAFQEYFKWQERFEYKGSDEAGIKARYWLSEIRNEASKRRVEIQEKREQRKLARKGMVGRPPKITK