Scaffold Ga0255147_1000028

Overview

Basic Information

• Taxon OID: 3300024289
• Scaffold ID: Ga0255147_1000028
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 96811
• Total Scaffold Genes: 123
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 59 (47.97%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015080	Metagenome / Metatranscriptome	257	Y
F027828	Metagenome / Metatranscriptome	193	Y
F048940	Metagenome / Metatranscriptome	147	Y
F058096	Metagenome / Metatranscriptome	135	Y
F061794	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_1000028116	F061794	N/A	MPFTKKFPKSGETKHIRVPAVYADLVQELMEVFDKKFDPERGQHFLRKYISSLR
Ga0255147_100002879	F048940	AGGA	MTAAQRMEKQFFCNFISLINEVQGKQKLPSQLKGNRKSAWCKQSKNPKQKKDALSRV
Ga0255147_100002881	F015080	N/A	MFDQLVFEAHQIPGAIQGKYKFSNDWSISVVAGLPGSGLYGNVTDNTYEVAIFRPNGNMTEDVIGWNTKEEVSAMMKVLVHL
Ga0255147_100002885	F058096	N/A	MNAQMTVDECKVMWVVGALERLATLGLIGADIPLKLTANAVEDYLEIDEHRELLFDSDFEIASIFNAIANDETDTDPDDIKPMIELLLEYKNNRTEVVKYALSQQFV
Ga0255147_100002899	F027828	AGGAG	MMEPTTKNMLDTVLMIEDILSTKQMTALRDILYFYKEFELELYKYPPEDTLFTETQRELFKIFDIK