Scaffold Ga0255147

Basic Information
Taxon OID	3300024289 Open in IMG/M
Scaffold ID	Ga0255147_1000026 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024289 Open in IMG/M

Scaffold ID

Ga0255147_1000026 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	99109
Total Scaffold Genes	161 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	101 (62.73%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

99109

Total Scaffold Genes

161 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

101 (62.73%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (81.82%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.4271	Long. (^o)	-81.6053	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.4271

Long. (^o)

-81.6053

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001881	Metagenome / Metatranscriptome	622	Y
F002226	Metagenome / Metatranscriptome	580	Y
F008358	Metagenome / Metatranscriptome	334	Y
F008943	Metagenome / Metatranscriptome	325	Y
F009329	Metagenome / Metatranscriptome	319	Y
F010764	Metagenome / Metatranscriptome	299	Y
F012110	Metagenome / Metatranscriptome	283	Y
F066719	Metagenome / Metatranscriptome	126	Y
F071163	Metagenome / Metatranscriptome	122	N
F074802	Metagenome / Metatranscriptome	119	N
F074911	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_100002612	F008943	GGAGG	MKFDGIDWAVLFVFFIAIVAGAIITYDAQQQRVLFQQTYNKNLECRQALKDQTVVRVNEICGEVPVIGDFVK
Ga0255147_100002616	F001881	N/A	MTERAQEFMNEVWEHRNNFGADTEEKLVSAILCLAAEKVQFFTAQDGRIVLDKGDMIRLAEELNQ
Ga0255147_100002621	F008358	GAG	MSSYTFWLIIFAFVLYFIATDQSVARAFYMLTQLARVQYEKTKWWILHNPANPIVKYFMWRRAYKLAKELQQELKSRNK
Ga0255147_100002623	F066719	AGGAG	MVVFLTATIITCSDALSVIQRISKVVGLTEVQRTEIIQEIRKVIPSCPVKVVKQ
Ga0255147_100002638	F002226	GAG	MSLISQQDRQMVIEALEYYVQKLKEDNCTPASISAFQTLLNWVELEHFKHEN
Ga0255147_10000264	F074802	GAG	MTKCTCSYIQIGTKTSNSKNLNPDCPLHGTDSVWYNSPEQVNKRKDRSQRLRELYDAARKARENVK
Ga0255147_10000266	F074911	AGGAG	MILDEEVIKLVKEHFEEDWDENDGWEYSGNFDAFVKFAQEIFQMGYNEGSYDMSYYE
Ga0255147_10000267	F071163	GGA	MTKTQSALERVIIELDSWCDNWTPTSYNDPRISLRQIADRARDVLEQEKNDYDFR
Ga0255147_100002675	F012110	N/A	MTKALLLLAWVPFLFVSAPQASSIQQVAVSCDTAMELMDIVKNDDVVIQKIEDRLLLELRKDFIVKC
Ga0255147_100002688	F009329	AGGAG	MTPYELRFEIFKQAYNMLNDQFSMEYDTAVRWNEDENKKVAMDYPEFPTLNQVLEQAEIINDFVSSK
Ga0255147_10000269	F010764	AGGAG	MIEIKKSYVLELTEQQAKELYWILRDVNLETDNTLKLVYHELKKLFDAGIR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0255147_1000026

Overview

Ecosystem & Geography

Associated Families

Sequences