Scaffold Ga0255147_1000022

Overview

Basic Information

• Taxon OID: 3300024289
• Scaffold ID: Ga0255147_1000022
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 104732
• Total Scaffold Genes: 166
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 128 (77.11%)
• Novel Protein Genes: 20
• Novel Protein Genes with Ribosome Binding Sites (RBS): 19 (95.00%)
• Associated Families: 20

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F000808	Metagenome / Metatranscriptome	882	Y
F004092	Metagenome / Metatranscriptome	453	Y
F005092	Metagenome / Metatranscriptome	412	Y
F007115	Metagenome / Metatranscriptome	357	Y
F007363	Metagenome / Metatranscriptome	352	Y
F013526	Metagenome / Metatranscriptome	270	Y
F014144	Metagenome / Metatranscriptome	265	Y
F015730	Metagenome / Metatranscriptome	252	Y
F016958	Metagenome / Metatranscriptome	243	Y
F017484	Metagenome / Metatranscriptome	240	Y
F027449	Metagenome / Metatranscriptome	194	Y
F034902	Metagenome / Metatranscriptome	173	Y
F038479	Metagenome / Metatranscriptome	166	Y
F045752	Metagenome / Metatranscriptome	152	Y
F049497	Metagenome / Metatranscriptome	146	Y
F052590	Metagenome / Metatranscriptome	142	Y
F060903	Metagenome / Metatranscriptome	132	Y
F082666	Metagenome / Metatranscriptome	113	N
F097345	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_1000022107	F097345	GAGG	MANVNQTAFPPYYVNKYINGQLTDFGILSGYEQMIPIFPTSPTNIEDVFKNYIGAPGVGDPLLIQYERLVRFRVGPFYPRKREQLIYYLYCTDLSKVSDAHRIITDCMDREDASAQDLNKWINNNPAEFPDGRNVFFHNSRVYQADETRDILELASARTVYSNKLIIEYDYHSSQSYYN
Ga0255147_1000022120	F049497	GGA	VATTNKDFVVKQGLKVATGVTFPDNSVQTTAYTGSPLTVGSTFPVSPSTGAMHLDTVTSKIYYYYNSTWNPLANYDDTQSVVDHDHDAGGFVEDTYQYTGNGVTLPAFIWKDFDGGSPSTTSFSAVIDGGAAV
Ga0255147_100002213	F082666	AGGA	VEISPTTLEPYLQKQVDHDISGIDIMHGHLKVLMLQAEQELINAQALEDETEEAMDSMERKYWEGMCDAYAHLYSLTYDLSFAIAARKEEE
Ga0255147_1000022145	F016958	AGGA	MKLTITSMAGNTSTMELPTKENVFYFIDLYKKSLKKNQRVKITCDILGIDGYLQGTAPLR
Ga0255147_1000022147	F038479	AGGTGG	MTTLTLNDKIAIAAEKVANGELVSFRGASVTTYAKVMRLANRIKQEREFPQCPCGECD
Ga0255147_1000022149	F017484	AGGA	MSIEIFRMNNEGAGWVDIEDATTAELLDLELAIVTKAPMQMLCFKCHTPIPKGNVCVNHKNVKGGIYLD
Ga0255147_100002215	F007115	GGA	MRILRGLRLGISKEEKVAIAIGRLVSDFGLDLEAVGKYLATTQPYVVYARVLEVLEATEYNKTVSEYRQIGQYYGDQLR
Ga0255147_1000022150	F013526	AGGGGG	LTKKNVLISFVTDAETDIDAVFSLNKILHKLSDEELEKFDAFTVLDVE
Ga0255147_1000022152	F015730	AGGAG	MLSQNTLDKIVYEYQHGGVKNYHPEISMSERKALLKYLFSLPTHCSCCVKG
Ga0255147_1000022157	F007363	AGGA	MRGYSIVDLLVDQYYAPTSLRRRFNGGIINFAEKREDTYPPEGWEHFAIRYRPTGSLKDEWATVAVRVSDY
Ga0255147_1000022159	F005092	AGGA	MTEKLELALRLIKSCHICNGTGYHYYGNGEDYFDAESCECNLYDIILDQDGDVIWDNGLLTEPELAIFGTMEAN
Ga0255147_1000022161	F000808	GAGG	MEYNYSLTISYDGELVSTTRTADLLEIVNAWNKCVDFGDAKEYATYNLSDPIGKMYTKTFYRNGWVSIK
Ga0255147_10000222	F000684	AGG	MTLGGYTYQVGDLFTTSKTGVTGRIEKFIPVRQNVTRVMLRLANNQTRFAMVKTY
Ga0255147_100002224	F060903	AGG	MPNWTEELSDEQKKQVWEFIVFTVKEIREQIALDIEYTYEVWATHGKTKSRRTKKAFEVCADIARGLNERMPDETNRGSTGEG
Ga0255147_100002228	F014144	AGG	MEKGRVVICDLCNKTIEVRWGIFAHQSLYRHKKADHK
Ga0255147_10000223	F034902	AGGA	MISTALAIQEATMEAVHDEETMNMAAHIFHSRNEVSEDEFIRMMFMYSAHLSAITATLVTHACLTESQLNDMLETIKEMETMGKDIE
Ga0255147_100002231	F045752	AGAAG	MADPNQTPQRGDWACPCNGCKKAVAFERKQLLELLEVTKVEYQIYRGSSFDKDGNLLWMKDDVEAYSEGIDVAINLIKSRMDKKK
Ga0255147_100002252	F027449	GGAG	MYTDKMRMAFHSIPAPKNFGVSLIDNETFITIKLDERSFIRMTHDEKLDAVKYVSMVKKALEMEGAIVLVTREVIK
Ga0255147_100002254	F052590	AGGGGG	MIVTNLEKMEKIVARNNNLSWIGWDVADRKRSDAARTAVNGVRVNGVWYLQRIYPVNRNGWDIPNKYRG
Ga0255147_100002287	F004092	N/A	MADSRFSTYSGKFPCKECGEEATSLRLWIETGDATWMCSKKHLSKVNLIPQKKTKKDYERKERE