NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255147_1000008

Scaffold Ga0255147_1000008


Overview

Basic Information
Taxon OID3300024289 Open in IMG/M
Scaffold IDGa0255147_1000008 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)241027
Total Scaffold Genes246 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)179 (72.76%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001008Metagenome / Metatranscriptome807Y
F001957Metagenome / Metatranscriptome611Y
F009462Metagenome / Metatranscriptome317Y
F015331Metagenome / Metatranscriptome255Y
F076859Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0255147_1000008129F001957AGGAGMNSVDMATNLINRAKNLHKYIVETDVPEDFRFNGTVPFDIQIKDNVISAEVYGIDFNDAVNILDKWLETCK
Ga0255147_1000008135F009462AGGAGMELHESVRDTYKEMVVKEHAGFRLTLKKHEVLSPKGLFSIDMVQESLKDGEVVGTQTYNFFMTKEECQSLAYGLTA
Ga0255147_1000008217F001008AGAAGGVSKAKHKPYQWIDGETADRITSLNLKDYRAYLKKELRQWKKNPKTESNPDGYWLHPEDVVINMRTIEALDLIISHFPETSDDIK
Ga0255147_1000008218F076859AGAAGMLYGALLELSQNGRVWHESTVSPEYSHLTEDGKNAIIHVVEEMFRGLQTIHKQEVKEEAKRQTLEGLKS
Ga0255147_100000843F015331N/AMLDNETHKDLDFWTNLKWPAAPNEDDYCVFEQYCTGKVLLLGSTKMLLPLCTEAWDLEPKYADPKIKNRDWFTLNEHWDTIIVDGALAFGQDYCEKLLKVVLPNCNRFIARAFLNPNWPTKYAVYFPRANELTPQPKEHPINEVYTFYIWNNK
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Institute for Fundamental Biomedical Research
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