Scaffold Ga0179589_10339409

Overview

Basic Information

• Taxon OID: 3300024288
• Scaffold ID: Ga0179589_10339409
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 681
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000861	Metagenome / Metatranscriptome	857	Y
F043529	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0179589_103394091	F043529	N/A	TPSPEFDYYYKACRKGDREAKAVAVSYSPVGVLADASEITGLPRDNFEVHEISKAEFEALHSK
Ga0179589_103394092	F000861	AGGCGG	VSPEMTSLPAHVIAIEKRGDQYQAVVQISTKYRGSFNTLAFGEIKPYSGSLKDVRLDLVYYRDPGLNAGDQFPLWTLH