NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247690_1003595

Scaffold Ga0247690_1003595


Overview

Basic Information
Taxon OID3300024287 Open in IMG/M
Scaffold IDGa0247690_1003595 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK31
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1914
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F095074Metagenome105N
F097628Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0247690_10035953F097628GGGGGMTDLTNRMRTCAAAILAQKDKGGLGEPWVTEMVAADAADLLIEASNMLEAVPADAVDLLTEARNMLETVPAPPGEPMEIIPPVAPRPSIEFGLGSATWLAPGDTLPKANPYRSASTCPNCDSRANKTARREGSVIMLTCPACGHQWQYQR
Ga0247690_10035955F095074N/AMKIQRHPEIDALLNQIAAYRLKTGIGRTQFGLIVANDGHFIRRLEGGRLPRLPTIDRVRELIRRKPAKIK
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