Scaffold Ga0247671_1002391

Overview

Basic Information

• Taxon OID: 3300024284
• Scaffold ID: Ga0247671_1002391
• Source Dataset Name: Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK12
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3932
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 40.4449
  • Long. (^o): -87.0297

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062100	Metagenome / Metatranscriptome	131	N
F069031	Metagenome / Metatranscriptome	124	N
F076048	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247671_10023911	F076048	GGAG	MEPGKIRLINSGGQSDAGITQTIAVSVGNRLYRVTNDGSANGGPGTMRIRIARTVFGFTLNSVFDLTAGRSIDVVGSTLSVVALDTLQLFGSYDTI
Ga0247671_10023912	F069031	N/A	MKPRIAGVRLDTKRMSFACAAPGVAMVVLAAVLPPQWHPVPLLFAGLALIALSHVLTPCRDQITRWWRSRISKSSPDRT
Ga0247671_10023914	F062100	AGGAGG	MALDFTIVTDVRQRFGDYARGETEAAPDADTRIGLERSFAFSCPSVDRKQFAILLFQTLGVAVRQGLEINGQTIFGGIAPSIDPAARILGPRSESPEDRTTLGTWNGHVMLIHPGVLQENNILRIRAADATAANIDDFLVDNVVVVFKTAQQPGGARGGAAKAAKKPAKKKRR