Scaffold Ga0247670_1028327

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0247670_1028327

Scaffold Ga0247670_1028327

Overview

Basic Information
Taxon OID	3300024283 Open in IMG/M
Scaffold ID	Ga0247670_1028327 Open in IMG/M
Source Dataset Name	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK11
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1003
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	40.4449	Long. (^o)	-87.0297	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003022	Metagenome / Metatranscriptome	513	Y
F019882	Metagenome / Metatranscriptome	227	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247670_10283271	F019882	N/A	VPDGGNERAIMRYTLTVGLLVCMPTVAFLAVAGVAVLAGNLRHRLVREADHRQPEWGMADAYVPGLRLASGHDRDQLHDESLPCRLTADAVSRTA
Ga0247670_10283272	F003022	GGAGG	VRRLLALMLGVLGMLAAIGLSGSPARADTLADCLGTHHVCVTSDGRSLVSQSQQTQLEKAIGNDDIYLVAAASGSAGYDAAMRQIIGTLGAEKKQFVVGFLDSRLRHFGADNQGVLEAGAAANIATNVVQQHRSGRDIFAALQDFVRDVQQESQNPGSSGAAAGPPSHTLRNVLIVLGVILLVVVLGGLFIWRPRRLRRQRDLAEAKAAAQDDLLALNNRITDHQND

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