Scaffold Ga0255209_1000131

Overview

Basic Information

• Taxon OID: 3300024280
• Scaffold ID: Ga0255209_1000131
• Source Dataset Name: Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Miss_RepC_8d
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33141
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (19.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Louisiana
• Coordinates
  • Lat. (^o): 29.8571
  • Long. (^o): -89.9778
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031072	Metagenome / Metatranscriptome	183	Y
F098637	Metagenome / Metatranscriptome	103	Y
F102624	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255209_100013116	F102624	GAG	MKYITNQYNYKNQWFNVLLSIVFTPFYGIFFIRNWARIKGYFAPERRYILKYPIGTAVLYTVETVLIFYALNTVTLSYYTILRSGFILFNIPWFKYLLNKPVSRLYYAGCGLLVVSHAFAVGQYITYYASVGTGTDTVIIIISCFLNSTYNNVIEYAMKRHSGVMTNIDFQIVFQTTYFVIAIPWTVLYTVEYSPPITVSAMIMYFFIAVGLQLYMFNKIYILNNKDSAIPANILLGGLDLVRRVIQLTYSFLCFNEPFDAVIGLSLVFLGLSGGVLLFQYIQDYRYRVIGMSMEIELPSLSLHPHPHPHQHQWLIGDEGDDADDESAAGAGTNTGAIV
Ga0255209_100013126	F031072	N/A	MQTIRIPNPNPRTSPAGVSGSFNANNQGFSGTGRVTVGGPNRNVWAEGQVSGGWSGRPNVGGMVGGTIRF
Ga0255209_100013128	F098637	N/A	MTTPRTPRTPTSTPFPEETSEYYGWFSEALQQLRISHISQHKFNGKILESPPYTYWTRYGGTDGEKVLITEVTHTSIPTPRQLANGDIFVGRVDKYWGRSYTRIDTRLP