Scaffold Ga0255207_1003829

Overview

Basic Information

• Taxon OID: 3300024277
• Scaffold ID: Ga0255207_1003829
• Source Dataset Name: Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Miss_RepA_8d
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2930
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Louisiana
• Coordinates
  • Lat. (^o): 29.8571
  • Long. (^o): -89.9778
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F002060	Metagenome / Metatranscriptome	597	Y
F003582	Metagenome / Metatranscriptome	478	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255207_10038292	F002060	N/A	MQIDYITVTLTLLAAILSGFATAILAGIRDAKKEKIRREERDKDHLKMEVKDLKIDLYKLEKELTEWKDKYYEAIQELITLKSELENALTMLNHIEIHEDLDSEYLK
Ga0255207_10038293	F000671	AGGAG	MEKILCYSCNKTKNKLNVRRSSLLPINLFLCQTCIDQKLEPRWVVLISGRQNGHEHVKEFVQKKRYIGSEITAAELLI
Ga0255207_10038295	F000473	N/A	MFGNRLGKSMPSNLYDNKYFKHGVNLWTGEPNKPVFYNEEMKKKLREIKKPLLLMMDVVKYPDFLALRLYEDNFIQFSGTKKEEAIDYVMKVKKMIESYGVRCELEGVPGGRTIT
Ga0255207_10038299	F003582	N/A	MKKYEVKLEVMAEIEAFDEDDAKDYISDIFGVDDEIKFIKILNIKEK