Scaffold Ga0255205_1000747

Overview

Basic Information

• Taxon OID: 3300024276
• Scaffold ID: Ga0255205_1000747
• Source Dataset Name: Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepA_8d
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6019
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Louisiana
• Coordinates
  • Lat. (^o): 29.8571
  • Long. (^o): -89.9778
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029387	Metagenome / Metatranscriptome	188	Y
F054788	Metagenome / Metatranscriptome	139	Y
F060847	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255205_10007473	F060847	AGGAG	VTVLLNAAGQPEPPTHVVARLRALHAGLFLRFLEHTGEHWAICLRWGPEDRRWEWVQQGETDPEMAHDIIGYLPMLCSVDEAPGYLERTFRQYPKDEVRRMADFVEQFNATQPISQAADAALTEALDTL
Ga0255205_10007474	F054788	N/A	VAVTKAQLIALTRETMDAVSSDRWSDATITTVLSSVYGDEWSNILNAQPYYTFAKRTVSTDGDGMVPFSALSTGGGDTQQNFYRVLSVSDGNVLYTQTRFQDVPLATTTNYLPTYPRLFYTAGQALQVLPVASGTTLYVYVNYKPTPFNQLATDNSVIDFPDGGELILANEAGASLLNKGGAESGAARVLREEAKLSRTLLLDDLRRYTIQPTMMAYPDQKYDWSGG
Ga0255205_10007475	F029387	GGAG	MARERLADAQPRMDGGLNSVSDDISLQPNQLRQTVNMRLTDYGAASKRGGTQRTSSAVLAAASVLNGYTFQQDSGTNQILAVCNTDLFTTTYGTFPLTYTNQGGTFSSTVAPDFAQFRDGTGADVVYIADGGLLNKWSGSVLTSDIVNTVATDTIQVHNQRLWGCGNSSFPDSIFYSSLNNGDTLGYGAGGGGQIVVRTFGDEKIVGLASVNTSLLIFHRRGISRLTGYGQDDIVAAPAGLTADVGTIAAKSIVANNNIAYFISERGLYRCNEGEVAAVGTPTKPDPILPIIRQLSSSDFDKIRAVINRATKELWITIPGYGCYQYHTVLDAWSGPWNGAYVSPDTTALFETINTSGLPVILRGDASGWVSLCDAPNYNKDNVAANGTGGDVYTMVAQFHRQYMGDPALAKALRWGYLTANLNGSSSCSVSWLTDESSGSYQLPAGYGGVWSTGSTWGSGFWSGVLSRNFRVPMSGTGYFVDVTITDAGTTLPVFSQWQTETFALGRR