Scaffold Ga0255205_1000407

Overview

Basic Information

• Taxon OID: 3300024276
• Scaffold ID: Ga0255205_1000407
• Source Dataset Name: Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepA_8d
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7604
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (38.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Louisiana
• Coordinates
  • Lat. (^o): 29.8571
  • Long. (^o): -89.9778
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022191	Metagenome	215	N
F034162	Metagenome	175	Y
F042315	Metagenome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255205_100040713	F042315	N/A	VKKQKRYPRNWALEHKPSNKWQQVLVKRKDPNDRQAKKNAKTLPDLSPTELYEAIDEGYHYFWQRRGRIPPNYNAIRWAKA
Ga0255205_100040717	F034162	N/A	VRWVDASFRLPVTQNMPVEVELAGGTEKRDGVTGDWRPVVRWRTVVDTEPAKRKKKA
Ga0255205_10004072	F022191	GGA	MPEGIKTDGSHGRTTYSPQKLVNDLAVATLEGRGLGLKKHPRLGYVTEEDKRLFQRIVGITVEEFNQRLIGKLDNLADRIVDRMLDTVEDTPLNSLGFNLAVAIDKRQRLAGLNATQGANVNIQVNNYGSLSKEEIVARLSGKAPVPTIQAAPVELPNPNDIDVKKPVAVNVTG