NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255205_1000117

Scaffold Ga0255205_1000117


Overview

Basic Information
Taxon OID3300024276 Open in IMG/M
Scaffold IDGa0255205_1000117 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepA_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13700
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (45.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Louisiana
CoordinatesLat. (o)29.8571Long. (o)-89.9778Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020891Metagenome221N
F023838Metagenome208N
F042314Metagenome158N
F066745Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0255205_100011715F066745N/AMPFRSKAQSRACFASGGFDGSVDCMKWAKSTQYKKLPARVKKPKKK
Ga0255205_10001174F042314GAGMTHTQSGQELKDAGCALILEHTPERWVADFEQQAAALLKANGSFTAEEVVTLIGQPPNHTNAIGAVCRTFVKRNGLTGSYEPAKSPTAHGRIITRWSMTTF
Ga0255205_10001175F023838GAGMPTSPRLLALWLLVSASATCLPVTTSHGATIDLDRLIRCIEAREGARWASPGGALQFTRATWSEFSSDPYLRASQPDKARQIARKALFLTIQRMERDGIKPTVWLLALRWNCGYEGMRRRMREPWSYAEHVHNLYYDNDFQ
Ga0255205_10001176F020891N/AMTFSEHAFAACCHKAKQVGRRLNKDEWLATMQAAYDSYPHGGLLVSDSPKPKKAAPKVVEEGWLEELEANPAYAGIDIRRELGKAQAWASVRGVGVSQRRFINWLNKAMADRPIQYSGAGKTSFAPVQPQGPAEPAGWRDWVRENAQNPDNANKPWSSLDPAAQKYIISQLNA

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