NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224564_1046307

Scaffold Ga0224564_1046307


Overview

Basic Information
Taxon OID3300024271 Open in IMG/M
Scaffold IDGa0224564_1046307 Open in IMG/M
Source Dataset NameSoil microbial communities from Bohemian Forest, Czech Republic ? CSU5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)842
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.0448Long. (o)13.618Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003899Metagenome / Metatranscriptome463Y
F022923Metagenome / Metatranscriptome212Y

Sequences

Protein IDFamilyRBSSequence
Ga0224564_10463072F022923GGGGGMKAPACDAGDLCIALRAESTLFMPEIAKSAGTPKRVQHVSPFAFFEVGFVGWVVRVRFALNLDLSFDGSALGAE
Ga0224564_10463073F003899GAGMTGFIVSVFPFRNRVSSQEAFEGLELGEGKLSRPVLRGPGGRKAARLLGNNPK

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