Scaffold Ga0257076_10361577

Overview

Basic Information

• Taxon OID: 3300024269
• Scaffold ID: Ga0257076_10361577
• Source Dataset Name: Goat fecal pellet fungal communities from Santa Barbara, California, USA ? diluted pellet 2 Spades (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1695
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.4204
  • Long. (^o): -119.6671
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F086383	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257076_103615775	F086383	N/A	SKSYAVKTIFPLEDEIIQSILNSYDLTFSEKALLTALDRSITWNNQNFSNYDIVIWQTSIISSYVFHTNENVKPSFIKTINKFVPAMDIIVVVQPLQEDNQIIQKFNDLIQQFDNVYPVNFVYDGVDLTFKEVIETVFEVLPTCNWCGRLFTKNTHFKKYCSNNCKDYAKEEQNRLNFRNYYNRYKDTMSESQKGALGSRGANLHAHANEDHEVEARLISNEKKRLGL