NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228623_1001485

Scaffold Ga0228623_1001485


Overview

Basic Information
Taxon OID3300024267 Open in IMG/M
Scaffold IDGa0228623_1001485 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 28D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7255
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040106Metagenome / Metatranscriptome162N
F042906Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0228623_10014854F040106GGAMSMQKSYCKQMRYSGPESLTPSSAEKFDVLIQMEVLSGCQQACLGCFVDKNIDPAMNQMIIDRAKELTDGVKRTGLNLREFVIGPTDFFTASNTESVLNNSVVQEIMREHTGARIAAPAKFDVASMDRLKEIFAILDDENKFRRDMIIEFIMPISKVDQMLNDEEYFDNVMEKVDFFKNNTPKQMDWSWTLQASNVVGKKIDKETYNKIIQKSVNEYETIVEMNPAFSRARSQLVQRRNLFGWNDFLGKVIDKDNAQETVMSMANLYCNSINFVGLTIVPGENGPTTHLNVMLHEQAFFLNNKNLDVTGLTFEEILDRKNELVTKGINRSSKVSDCSDCQFAVACASRLIFEAQETLNVDGCVLNKDVLENYNPFDFTWNDDAMKKLGDVS
Ga0228623_10014858F042906AGGAGMPLIKNNLYYEMTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNSSDKSQLYIAKEFIRDITDKGILVDEMLIGPTDFLASENFYEVMPELVDIINENSPILAFVSTLIDGDIERFCKYITDNINFDTEIEIGIATNPHKFFNEDYIQHVSDILKYIDKNLQHEVTYTFVVNIKDYGLDYEALHDQAVKRFDTILDFIPSVSRSHKANIILKTLDEFNEYFSTWHRESKLNNIMVDHSHAGMNYTVLNYKRGDWYLSPFMYENMAIYDDMFKIKSFDDVVPMIEQQIERAKGTECEDCPLFFSCYNRKIVMLRDYLGVDRCIAPKENMLNNIHN
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