NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228661_1036515

Scaffold Ga0228661_1036515


Overview

Basic Information
Taxon OID3300024266 Open in IMG/M
Scaffold IDGa0228661_1036515 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 75D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)898
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010105Metagenome / Metatranscriptome308Y
F070151Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0228661_10365151F010105N/AMEHIKEYGSFVNENLDTIKKTVLDFAEKNGKSKWKELHSVILKQKGLDPSDRDNRGQFSSYFSGGSSWQRGKGGANGRDANSHGLLMRPTKKDPRYLEKDGNEYVVKVWDCKSKLS
Ga0228661_10365152F070151N/AMKSFNEFLNEAVSYKDRSGKPFKIKGINFVYTDGGRFYGTSLYDVAKTSNVGKRSKIGFDETQKLLKSLGVKEKLPGGYGPDTLDRICKELKKKGIVCDHGDFMDVS
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