NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0228661_1023608

Scaffold Ga0228661_1023608


Overview

Basic Information
Taxon OID3300024266 Open in IMG/M
Scaffold IDGa0228661_1023608 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 75D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1105
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019396Metagenome230Y
F026261Metagenome / Metatranscriptome198Y

Sequences

Protein IDFamilyRBSSequence
Ga0228661_10236081F019396N/AKMFYHQDLLKAHMFVGRSCMAQQTYEPLVSPDGKTFCKNYEFPNEYQYRDEKDRPLYTDEVCDWFFDNEVKYLLKFEDKPYAPEIIDIDFINRRIFIDWYSKSCNQIMYAENKSWPQGEWRAQIKEIILDQYNEGIYKLTMYPHCHYIDSQGQMRAIDWYGCVPVDAPYIEEKYMQGIIHDTAQFRLEETGKAVDSVLNLETMFKRSLGTHVLWGDQNMSYIYKELFNA
Ga0228661_10236082F026261AGGAMPKYFGTTNNIIDWDPIVSVCKECTIGDVNTPVAVIDRSEAEAEGTLLESYRDIMNTWLDAGYKLEEIKWVDYYPGEHFDIEIQNKFAEIVDAQPLRVFVSDVAPGTNVPYHWDVEDKEEEWLAQGELKRWVCFMDKPRW
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.