Scaffold Ga0209976_10084342

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209976_10084342

Scaffold Ga0209976_10084342

Overview

Basic Information
Taxon OID	3300024265 Open in IMG/M
Scaffold ID	Ga0209976_10084342 Open in IMG/M
Source Dataset Name	Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00157 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1669
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Name	near North Sumatra
Coordinates	Lat. (^o)	1.759	Long. (^o)	96.774	Alt. (m)		Depth (m)	1855
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F094881	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209976_100843424	F094881	AGG	MLKWKRVSSGTLTLNQEILVDMISGMSGKNRVIKHISFTPTQYKFLRVYRDAEQIVDYDSYTLNGEYPVLAMDLPLTEGQNCKVGFYNSSGATTAIEIGIGYEETG

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.