NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209976_10071406

Scaffold Ga0209976_10071406


Overview

Basic Information
Taxon OID3300024265 Open in IMG/M
Scaffold IDGa0209976_10071406 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00157 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1820
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Namenear North Sumatra
CoordinatesLat. (o)1.759Long. (o)96.774Alt. (m)Depth (m)1855
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021318Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0209976_100714063F021318GGTGGMAEIFNTRKADYRGMQLWLNPVDKIIYATEGKPVNSFAEVNGYALYDYTKHFQNQKLAKDTLGNGAYQHDAFVDSEFKSLAEDYVADIKAGGRQRSAALRSFTNAAVDIINVWETVLGKLDRTYAGKNLAKEIAVPNLLISIDTATKFGGMTELDEGQLGQLKELTYVRANFEAKKYGLKFVIHEEARLKNVHNVLQDSIQVASNKVEQRQSFDVIAECDANLTAKAVIGVWDTFVSS

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.