NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233444_10053142

Scaffold Ga0233444_10053142


Overview

Basic Information
Taxon OID3300024264 Open in IMG/M
Scaffold IDGa0233444_10053142 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)2403
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.5847Long. (o)-123.5008Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000613Metagenome / Metatranscriptome985Y
F001416Metagenome / Metatranscriptome699Y
F003678Metagenome / Metatranscriptome474Y
F106095Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0233444_100531421F000613N/AGTTYEYVDPGTRIVVAAAVDTAGTATADTTMDFNVNNAEFSKNASVSALVTGEPFGWNGNYAMNDMVTTGQVRNRPVITFTNGTAATRTVDVAIFIGG
Ga0233444_100531423F003678N/AMDQFMLYAPLIIASIALILCLYACVRVGQFINASKGLDWDAVANITGDLATTKKTIQTLNNRLNGMHSPKLADQELMMQLMQRQSNQQMNGQIKNVGG
Ga0233444_100531424F106095GGTGGMSILSNLIKKAAPYVAQFSPEPYSKAAATAITIGQREQEIKYQKKLAIDRQAKEEKRMSEIFGSNSTGLSNIQSPMQAGRVQTTNAGFGSSFGSFLGDVGSNIVGPLSGLFSQVRPFISQQSQGQPALPTRTNLGGQESQSSGVTEGFVGGIPNILGQAAKFLRTPTGQIGTGLATGIGASLLSGGGGGMRITRKMKSQYRAVLNLAGGNYDQAAAMIGVSTDMFIAVLLKRFRNDGPVVTKAALRKTKTTVRRLKSMCDMYDSLRPTATRRKSPMRRASTTLISNK
Ga0233444_100531425F001416AGGAGMPLVKKRLSIAAGATSDQVLSGTTYEYVDPGTRIVVAAAVDTAGTATADTTMDFNVNNAEFSKNASV
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