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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024264 Open in IMG/M |
| Scaffold ID | Ga0233444_10012982 Open in IMG/M |
| Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6473 |
| Total Scaffold Genes | 18 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (61.11%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| unclassified Hyphomonas → Hyphomonas sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: British Columbia | |||||||
| Coordinates | Lat. (o) | 48.5847 | Long. (o) | -123.5008 | Alt. (m) | Depth (m) | 10 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F031151 | Metagenome | 183 | Y |
| F059457 | Metagenome | 134 | Y |
| F089161 | Metagenome | 109 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0233444_1001298210 | F059457 | GGAG | METTKIGNTELYTARVLNMSVAQYYGVVKEYNELVVETRELNKKELEKNGDKAELNLYYSVRYNLNKLVLEKINGENNE |
| Ga0233444_100129822 | F031151 | N/A | MIEHFEKFNVSGKGLLPLSFSHLNEFAFYRERWALKRIFGYEFPSSAPAERGKAVESGINMILNGISFSEASEKMIAEFDDNCSRISDPKVDDERANLIPLLELGASKFKEHAYSWELLGYQKKVEVLINEIPFIGYTDFHFGDKKTKEDFFIDLKTSKTNPSQMSTSHAMQQSIYFKATNSRQMLWYLKTPTKTKAPEFTQLELASYHHYVKICEHIVNVMGNYLKTVNSPDDVRDSLIPNPDNWIWKEENVLNARKEVWGY |
| Ga0233444_100129823 | F089161 | AGG | MMSDKYNLSDELNQSRELDQDQEKETAIYKHLADIGVMDKLVFALNEYIIKFGRTSNVHDQCFDLKLQVLANKKHLQDWVDKIX |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |