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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024264 Open in IMG/M |
| Scaffold ID | Ga0233444_10012762 Open in IMG/M |
| Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6557 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (95.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: British Columbia | |||||||
| Coordinates | Lat. (o) | 48.5847 | Long. (o) | -123.5008 | Alt. (m) | Depth (m) | 10 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F050370 | Metagenome / Metatranscriptome | 145 | N |
| F052566 | Metagenome / Metatranscriptome | 142 | Y |
| F077246 | Metagenome / Metatranscriptome | 117 | N |
| F091977 | Metagenome | 107 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0233444_1001276210 | F077246 | AGG | MDLSNNNIVIIPESWDDIHKYISDTFEHKAYATVLALMVENYTLHEFSKMGGYAFSEWKQEYLKDVNSNQN |
| Ga0233444_1001276211 | F091977 | N/A | MTLTEKKIQRMVDNYQFIRTCLLTDYNDKTIEEQMTQLYYFLRDQMTDVERIDRQEASNRRTQLNSNGYTGKAGH |
| Ga0233444_100127625 | F052566 | GAGG | MLDKHVYIRKNGKETWCYGVIEENSNFAVVCDDENQDGIWCGDLEFTPKNWDQVCKYLEENYDPNIEQIEVV |
| Ga0233444_100127626 | F050370 | AGGAG | MYQHEVYIPCAMGRQTFEDAKTLLTNIHGGCTAYNGVGHWSNEGENTDGTKNYIQLREEVWIVRVVSDDPTFSGLNLIEAELFKRNEKCVMSTTQEISVRFHNA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |