Basic Information | |
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Taxon OID | 3300024264 Open in IMG/M |
Scaffold ID | Ga0233444_10002823 Open in IMG/M |
Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
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Scaffold Length (bps) | 17794 |
Total Scaffold Genes | 33 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (63.64%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: British Columbia | |||||||
Coordinates | Lat. (o) | 48.5847 | Long. (o) | -123.5008 | Alt. (m) | Depth (m) | 10 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F051535 | Metagenome / Metatranscriptome | 144 | N |
F096208 | Metagenome / Metatranscriptome | 105 | N |
Protein ID | Family | RBS | Sequence |
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Ga0233444_100028231 | F096208 | N/A | DNLQFKFYNKDQTATAKYHCSKPRVDNLLFVNIPKCATQTIAAWAAQMDTRDGSIEVPYRFTILREPYGRLKSAFAYGVSAKYQYKFAVEDIGNWFLGKQLPDKFTPNQVDLLVHFVPQHEFIVNAPIKIDHYFSTGDMRQLRHILSELSGIDIKWMQENTSRYSTQFTIEYNKWFSLNENYIHSYLQKDIRLYKDIFL |
Ga0233444_1000282328 | F051535 | N/A | MKIDVYLKWIATATLVVGSFINSAFPELYPIGPIILIVGGAIWLVVSCIWREWSLIITNSVMTLVAVAGMAYYYLS |
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