Basic Information | |
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Taxon OID | 3300024264 Open in IMG/M |
Scaffold ID | Ga0233444_10000781 Open in IMG/M |
Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
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Scaffold Length (bps) | 39171 |
Total Scaffold Genes | 56 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (12.50%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: British Columbia | |||||||
Coordinates | Lat. (o) | 48.5847 | Long. (o) | -123.5008 | Alt. (m) | Depth (m) | 10 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F001740 | Metagenome / Metatranscriptome | 643 | Y |
F002344 | Metagenome / Metatranscriptome | 568 | Y |
F004520 | Metagenome / Metatranscriptome | 434 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0233444_1000078115 | F004520 | N/A | MKITKEEKLKITWRVVDSLYEKLANELEYELQEHENFPETNDAYFDLFNEMTIKIVKYMRSELFSPKTHEDLK |
Ga0233444_1000078117 | F001740 | N/A | MYNTNNPSNWSWSKAFDEMNKYVHQTEMTQQSINHVLNYPGEANGVFMSLDKSQQNDVYEILDQIL |
Ga0233444_100007817 | F002344 | AGGA | MIYDKLKPHIKAKMKENAKEYESVNWLLDKLKQKHSYSDLTIDQIRSICTFGDVFYHDLTQRDIIWGDWLTNK |
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