Scaffold Ga0233444_10000662

Overview

Basic Information

• Taxon OID: 3300024264
• Scaffold ID: Ga0233444_10000662
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 43024
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (54.24%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.5847
  • Long. (^o): -123.5008
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001205	Metagenome / Metatranscriptome	748	Y
F004235	Metagenome / Metatranscriptome	447	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233444_1000066235	F001205	GAG	MFNDVIGDWPTHERFILTSCDERYFEQYFPRFYKTYSEHWKLPIHVHIIDPSQTSRYRLDRLPVSYTHCTTDKSILKFPYSYETYCQAQRFILLGHNLLENQSVIVADVDSYALREPNETQKHTVESDMAFTEYNGRLMATFCNFHHSKRTSAKEAAIEMQRLIEDTDTIGVDQLIIKQIFKALPYNNLTHGEWIRHLDVKTDYDVNEHNKCLIYHEKGTRGKGKGISISWNHITE
Ga0233444_1000066259	F004235	N/A	RTVTALIGEQDFIGKAITMIAVDWDVDADASREAMEAVSNTILSRATILAAGAVYDTGTKQDFLLEGDFSTTSGGSNTISTFKSLDGTVEGTLAQVLVEDIINLGTVDSINFGSGTVAVTIKTTFKYA