Scaffold Ga0209978_10283656

Overview

Basic Information

• Taxon OID: 3300024263
• Scaffold ID: Ga0209978_10283656
• Source Dataset Name: Deep subsurface microbial communities from South Atlantic Ocean to uncover new lineages of life (NeLLi) - Benguela_00093 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 828
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -27.74
  • Long. (^o): 14.251
  • Depth (m): 1133

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011979	Metagenome	285	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209978_102836562	F011979	AGGA	MLGSCKDCGAPLIEITHHGDRLTGCVTCNVWRGDKGAFVVELNIEDWEALGKMPESVRWTLRPRKTQ