Scaffold Ga0210003_1035204

Overview

Basic Information

• Taxon OID: 3300024262
• Scaffold ID: Ga0210003_1035204
• Source Dataset Name: Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2738
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 58.622
  • Long. (^o): 18.254
  • Depth (m): 437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005105	Metagenome / Metatranscriptome	412	Y
F007826	Metagenome	344	Y
F012166	Metagenome	283	Y
F015027	Metagenome / Metatranscriptome	258	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210003_10352045	F007826	AGGAGG	MNKETEFTFKLLNLIKKCREKGKFQLAIKLIDKYKINREKLAEDYYD
Ga0210003_10352046	F015027	AGGAG	MQDKLYEATSREVMNEHEEYLNADVPKQVWVDRNKYLHEHVNKLTDEIIELRKDNKRLTKELNDKEEHVNFLRRSGAI
Ga0210003_10352048	F005105	N/A	MVRKICDKCMGNGYRRIWKDQTESEKITIQCTKCESAGEIDEEPNYDSNGFGTDKLQ
Ga0210003_10352049	F012166	GAG	MADLVNSGVFLERKLTPEEKLWKAVLSQGVYEACSKKYNALPLTYGEMKSALEWVNMSNKDFCVVCQFAGYDPRYIFRKAKNKINKWLPNGA