NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210003_1023209

Scaffold Ga0210003_1023209


Overview

Basic Information
Taxon OID3300024262 Open in IMG/M
Scaffold IDGa0210003_1023209 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3685
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)58.622Long. (o)18.254Alt. (m)Depth (m)437
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002495Metagenome / Metatranscriptome554Y
F003365Metagenome / Metatranscriptome491Y
F005537Metagenome / Metatranscriptome397Y
F008307Metagenome / Metatranscriptome335Y
F012861Metagenome276Y

Sequences

Protein IDFamilyRBSSequence
Ga0210003_102320910F008307AGTAGMVRVLKKSSLELMADIEEFFDGATVEEATEKAHNQKMPGELAKINITDNKFIKATIKMVGEEYDDRSKKNIGTEKATRXRS
Ga0210003_10232092F012861GGAGMKKYNKIKEKINNLEEINFTAKEFHLIFEMAGFDLLSNSEMRSLILAFCEKLNPELSTREYDKIKSHHPDL
Ga0210003_10232093F003365AGGMLKTIGKEWTKKEDGGCFTADHMSPSQLNKSLDLWFNDYVVLTAEQRKSLFGNLNMDIGGIVGQAVQDMIVHNLTLEEVMKGKK
Ga0210003_10232096F002495N/AMPINNSNNGSGKQKDWVLFPFDATNEKSIKLDFSGNINLDNGNKGTILGVKGSSRDGNTKFVKIFAQVGVLFKGDDKFTGDMNYPEAGGHKGLIGWVNESGNILSGYKNEPRPKQDAPKKETPIQPKAESKEILF
Ga0210003_10232098F005537AGAAGGMSDNIKFINNLEKLLHEKQGDYGHFDHTSFAMAGMIEKYLTIYNNKEVKVPLKFFGLFMIFLKSWRIMQSKEYKKDSFDDINGYTELLRRLVVDENKAKRS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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