Scaffold Ga0210003_1020222

Overview

Basic Information

• Taxon OID: 3300024262
• Scaffold ID: Ga0210003_1020222
• Source Dataset Name: Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4067
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 58.622
  • Long. (^o): 18.254
  • Depth (m): 437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018478	Metagenome	235	Y
F025412	Metagenome	202	Y
F027524	Metagenome	194	N
F099320	Metagenome	103	N
F100003	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210003_102022211	F027524	N/A	VNEDFIKEKRQVIETACKNICKHSDIWRDLSQEVNIYFLTNALPENLEKIDGFIFVVAYKMFHLSGSEFNRLHFDNVLIESTELDYLKEIDIPYVDGNVYKEYIEQVGQLDDMEQIWVEEIVKRNLSIRLFSEHTGIHRATATERMNLIYEKLRNKNK
Ga0210003_10202225	F018478	AGG	MVKDYKEMDWSKKYTYKDKKIYISYETKKYILCSFYESGKGTFKLDKTAFHG
Ga0210003_10202226	F100003	N/A	MKIKKKHYKALQYASLIQRWKYLPYNFIFEVVNNCEIDEQKLNRNRLEQNGKRL
Ga0210003_10202228	F099320	N/A	MEENVYSYCLEVHKDGNLYMVTEYMNGYITIYPANATMEEEGEVYFINLHE
Ga0210003_10202229	F025412	GAG	MNYREMKWGALKSYGTKLGIDTKGMTKELLLEWLDAMPDVAHGIEHLEPFKGIKQNHPLFDEIKDYLPYLKAFKRLKAVSPVKEVNVAIATLFMKYIEEQKNIAINLGCGICKHKYYERLIAGYNKLVDQYGGERI