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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024262 Open in IMG/M |
| Scaffold ID | Ga0210003_1014546 Open in IMG/M |
| Source Dataset Name | Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5119 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (9.09%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Baltic Sea | |||||||
| Coordinates | Lat. (o) | 58.622 | Long. (o) | 18.254 | Alt. (m) | Depth (m) | 437 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006492 | Metagenome / Metatranscriptome | 372 | Y |
| F007652 | Metagenome / Metatranscriptome | 347 | Y |
| F015852 | Metagenome / Metatranscriptome | 251 | Y |
| F060835 | Metagenome | 132 | N |
| F071094 | Metagenome / Metatranscriptome | 122 | Y |
| F072852 | Metagenome | 121 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0210003_101454610 | F071094 | GGA | MIIFLLTVSVCLLLLVVGLLLYIGYKVRQFEDTQDVIFDAAVNAEERNREIELNQEAILNAYSRQN |
| Ga0210003_10145462 | F072852 | N/A | MTDSQKLLGGRGCKVLGVAAHTSLTGYAFIAQEDTVVTVFTVGSTDSLAAYGLSTALKAGAYIVVPSGEAITAITLTSGSVIIYNQ |
| Ga0210003_10145464 | F007652 | N/A | MNEIKYPPVRTYYICFDDERTEVKSYGAVEPNQVFETIWIFDEFTDEAQWIEALLVWGIVPDINEEGELVL |
| Ga0210003_10145465 | F006492 | N/A | MDAILEALASYGIAGIFLAVLVFYLNKLTDIHREERSQWQEANNAHVDKFSDALKDNTRALTEMRGEVKENRCKVT |
| Ga0210003_10145467 | F015852 | N/A | MGGDIAIRLIKAYTPYLLAFLLGVLIASKGCGDPETITTVIDRPVPTVEYVDRWRTDTVRFVSKKVITQRDTIYNDRIVNRLDTLFLVDTVSIVEAWLTEVAKYDTTVNDIRLTWQNYQNRTENLSITVQEKVVGAKFALGVHGLVGLQSDFKHSYTPLFGVGLQATVKKTYISANYGFNGQHFIGVGVGRNLISK |
| Ga0210003_10145468 | F060835 | N/A | MIYDTNPITREAIDKLLEKNASNQANLGTESTDLERFETKVKWAELHRKIRTLDPEFAEMVHPQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |