Scaffold Ga0210003_1010415

Overview

Basic Information

• Taxon OID: 3300024262
• Scaffold ID: Ga0210003_1010415
• Source Dataset Name: Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6414
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 58.622
  • Long. (^o): 18.254
  • Depth (m): 437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008425	Metagenome / Metatranscriptome	333	Y
F024797	Metagenome / Metatranscriptome	204	Y
F040126	Metagenome / Metatranscriptome	162	N
F049672	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210003_10104155	F008425	AGGA	MPDKDITYKQFVAHMDKGNKVYMKKPKSWQKVWFWWESKREKWFLNKAFDKREGGVVKPEPSVWITAKQMESHMDHMVRMGYKYYINE
Ga0210003_10104156	F024797	N/A	MKLSRKITYKNKQLIMSEFLRTGMGRKLLEQDIPKLTSVLERIANQMERSNKLEEKKFILEERIQKLTIKESTNKPPERPNNLLGL
Ga0210003_10104157	F040126	N/A	MKKLPVFEDFVPVGYGANNSASFSLGGVGTGRNETGYNMDAIVGPVQTLGNHVAEQAHSYESNDNEKHTAESYITEAKKHINDKIDEACETYSAMDESNLNEGTDIGMWNQGGLKGNENVQVTTFVGPKDIEDFGLGRKCMQINVGRSYVALNPADIVELKELLKNYKV
Ga0210003_10104159	F049672	N/A	MAKIKLIPKFESFSISDGVVSEASDYEFNPGEAAARLKTREKENIQRYRAAQERGDNYAIELYQLKVQMDKIDLEALKVQTAIHKLKQKNGK