NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210003_1006942

Scaffold Ga0210003_1006942


Overview

Basic Information
Taxon OID3300024262 Open in IMG/M
Scaffold IDGa0210003_1006942 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8338
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)58.622Long. (o)18.254Alt. (m)Depth (m)437
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004606Metagenome / Metatranscriptome431Y
F008190Metagenome / Metatranscriptome337Y
F029447Metagenome / Metatranscriptome188Y
F042621Metagenome / Metatranscriptome158Y
F059985Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0210003_10069422F042621N/AMESLEKEVLQWIKGDKIGDVETVKGIDNEWTVFESGGRIYTELINEFLLPIQGEPLDFRLTPAEVIKPTPKATPINTQSPIRTLFDKQKKNDTIKLNLTFPIVVPKNAIYEIISSSFDFVEVNDELESFIKDQISEDLILDSLFDSIKELVKTKYKIN
Ga0210003_10069424F059985N/AMIKIVLEPARNGVIKRVINDNHGGGKEQWTSTDVFESNDEHRNKYEYIMRFFYELCDDLSLHRGNKFEKEVIKTTTEWGSHYEPNQKEIESKIKELQAEIDLLTEWKK
Ga0210003_10069425F008190N/AMEEIIEFNFIYSKDAVKVKSFLGNIPRNIECINYMDIFNKLTKNDFYQSEPSDAVVSSYLMKQLQTVFDRDSLSIFYVLGNLNEHTVEGIKTYVESLTDKEITYNIYHSPDINVNGSAMLFENVIEFE
Ga0210003_10069426F004606GAGMKAHRIFTKGQTVYCLLSSFSRPNVLLPIKGLIVDTQWDPINPLYKIRIIKMYDNMKYLKSNFFDMNFKYEFDNRARKMPLKQEDFKNVKSLEDRFDDSDRERLYVIVESVMCKKTKNDLQGLFEKVQFYIISKNLKEIRDISSRPFFKGSLSTDSSQEFDVRFKRGWEDKFKGRDINIDKYLNSLG
Ga0210003_10069428F029447N/AMNVKSLTLKNKLIIDKTGEGYWDLTAPSFIYDSDLGVKALHYVTVDQVGRIDKISEVYYGSGEFVDALCVVNNIFNPFSLNEGDILVIPNLSRKDLVYKRPNPAARPNATQAAYVDTGRQSGKDQARIQRLIEKAKSSEAGVKQPMPPNMLQPGQAAKTYEGGKIQLGTNLPSRNTKAK
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