Scaffold Ga0210003_1005807

Overview

Basic Information

• Taxon OID: 3300024262
• Scaffold ID: Ga0210003_1005807
• Source Dataset Name: Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9376
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (26.32%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 58.622
  • Long. (^o): 18.254
  • Depth (m): 437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022459	Metagenome / Metatranscriptome	214	Y
F043289	Metagenome / Metatranscriptome	156	Y
F057993	Metagenome / Metatranscriptome	135	Y
F102835	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210003_100580715	F043289	N/A	MKITIEHHEETYTYESEYDSMGMSDVTEKLYGLCIAAGYHPDSVGECFFEKGREMTEHLYPDDKMEEEDAMCYLGEGETILVKSRYNEERKFTIIAKDCIEYSFNDDGHVGCCRNDDGSLESVDPSGGPYIGIGTNLGEVHKDLEDLTVTEITRSDTGLGYYYLTVK
Ga0210003_100580718	F057993	N/A	MRYKNVEFRQISESRRAEIVDKFRVERAEIVSWEWSEKLGKETCYTLCWIEADSEGYYMKTVGNRYVEYDDMDALNHVAKYALRSLNVQFEFEENQH
Ga0210003_10058078	F102835	N/A	MKVKIKAELDDEAFKTGDFIQELGKIQEEYLDKLIAKVEKEKWIEGMTKIEINDWLFDYCFNGWDRDKDGFEDTFSERLDKCSKYEVE
Ga0210003_10058079	F022459	GGA	MNKYQKEANAWQEATDHWVELTLKKYDGYDINDLTQVFMRGPFAGWSERMVYELAMGMDDSNKKVPRHK